BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB008B04LP1|AL425806
(786 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1349 1558 0.0
>3x_Contig1349
Length = 5890
Score = 1558 bits (786), Expect = 0.0
Identities = 786/786 (100%)
Strand = Plus / Minus
Query: 1 atcttctaccgtctacggaaaggtcagacgagctttatctcatgtatatccagaatgtcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2132 atcttctaccgtctacggaaaggtcagacgagctttatctcatgtatatccagaatgtcc 2073
Query: 61 acatgatactaccattgctagatttggaacaatacgaagtggatcatcaacagttttggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2072 acatgatactaccattgctagatttggaacaatacgaagtggatcatcaacagttttggg 2013
Query: 121 aagctattacatctggtaataacttacaaaaaccagatttcttgcttcttttgttcccca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2012 aagctattacatctggtaataacttacaaaaaccagatttcttgcttcttttgttcccca 1953
Query: 181 tgctttacgcaagtgtaaagtctctataccacatgctggataaagatcggtcggaggatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1952 tgctttacgcaagtgtaaagtctctataccacatgctggataaagatcggtcggaggatt 1893
Query: 241 tgcttctggagatggcccaatataggacggcgtgtcttagactttattcaatttttgact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1892 tgcttctggagatggcccaatataggacggcgtgtcttagactttattcaatttttgact 1833
Query: 301 tcccaaataagtactcgttacgcattcttacggggtttgttcttttgaattccgtgattg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1832 tcccaaataagtactcgttacgcattcttacggggtttgttcttttgaattccgtgattg 1773
Query: 361 aaaaccctagtgtcacaacgatcgcacaactagtaaggctatgtcaaagagctagattga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1772 aaaaccctagtgtcacaacgatcgcacaactagtaaggctatgtcaaagagctagattga 1713
Query: 421 ccaaggatcctgtgcttttggggctgaatgacccaaagagtatacagacgaagagaattc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1712 ccaaggatcctgtgcttttggggctgaatgacccaaagagtatacagacgaagagaattc 1653
Query: 481 tattttggcagatatttcagttggataccatgacatcgttacacaataacttggctcctc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1652 tattttggcagatatttcagttggataccatgacatcgttacacaataacttggctcctc 1593
Query: 541 taatcaaacttgatgagttcgacacttcattaccagtggaagtaataaacggtacgttga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1592 taatcaaacttgatgagttcgacacttcattaccagtggaagtaataaacggtacgttga 1533
Query: 601 atccgtccctatgctacattaatgcaaactacagattcgtgctcttgttaaatgagcttt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1532 atccgtccctatgctacattaatgcaaactacagattcgtgctcttgttaaatgagcttt 1473
Query: 661 gtcaaaagaagggctcatttggtggcataaaggagagaattgtggatttgcacgtatgtt 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1472 gtcaaaagaagggctcatttggtggcataaaggagagaattgtggatttgcacgtatgtt 1413
Query: 721 gcatgggaagtgctctttccttaaacaatcatctcactacgtacaaattatcgctacatc 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1412 gcatgggaagtgctctttccttaaacaatcatctcactacgtacaaattatcgctacatc 1353
Query: 781 aggtga 786
||||||
Sbjct: 1352 aggtga 1347
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5019
Number of Sequences: 1807
Number of extensions: 5019
Number of successful extensions: 19
Number of sequences better than 1.0e-20: 1
length of query: 786
length of database: 10,358,551
effective HSP length: 16
effective length of query: 770
effective length of database: 10,329,639
effective search space: 7953822030
effective search space used: 7953822030
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)